| Protein ZmSBP13 | |
|---|---|
|
ZmSBP13 is a protein in the SBP family.
|
|
| Information | |
| TF Name: | ZmSBP13 |
| Species: | Maize |
| TF Family: | SBP |
| Gene Name(Synonym): | SBP13 |
| Uniprot ID: | A0A1D6PDQ1 |
| Subgenome: | 2 |
Protein ZmSBP13
ZmSBP13 is a protein in the SBP family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF03110 | |
| Zm00001eb105640_T001 |  |
| Zm00001eb105640_T002 | |
| Zm00001eb105640_T003 | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d006451 | DAPseq |  |
sequence | fimo | position |
| Zm00001d006451 | DAPseq |  |
sequence | fimo | position |
| Zm00001d006451 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d006451 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmSBP13 is the regulator
Interactions where ZmSBP13 is the target
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Zm00001eb105640_T001 from maize genome v5
Amino Acid Sequence
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MRGTAPELQLHIASSRAAPRSPRPASSLAAGAAMDRKSKSAKGAASSAAASMAALAAAAAAGDSSSGPADGAPPPPPPHG
EEYSVPAKMAAVGDASSSSPVAPRRGVAAALGGGASSSSPAAVRRGAAAAAAASVVAAGGGGGPRCQAERCNANLMTEEK
PYNRRHKVCEAHSKAPVVLVAGLRQRFCQQCSRFHELSEFDDVKRSCRLRLAGHNERRRKSSADAHAGGGNNGFRQHADQ
NGRGDPAGNHFQIR
MRGTAPELQLHIASSRAAPRSPRPASSLAAGAAMDRKSKSAKGAASSAAASMAALAAAAAAGDSSSGPADGAPPPPPPHG
EEYSVPAKMAAVGDASSSSPVAPRRGVAAALGGGASSSSPAAVRRGAAAAAAASVVAAGGGGGPRCQAERCNANLMTEEK
PYNRRHKVCEAHSKAPVVLVAGLRQRFCQQCSRFHELSEFDDVKRSCRLRLAGHNERRRKSSADAHAGGGNNGFRQHADQ
NGRGDPAGNHFQIR
MRGTAPELQLHIASSRAAPRSPRPASSLAAGAAMDRKSKSAKGAASSAAASMAALAAAAAAGDSSSGPADGAPPPPPPHG
EEYSVPAKMAAVGDASSSSPVAPRRGVAAALGGGASSSSPAAVRRGAAAAAAASVVAAGGGGGPRCQAERCNANLMTEEK
PYNRRHKVCEAHSKAPVVLVAGLRQRFCQQCSRFHELSEFDDVKRSCRLRLAGHNERRRKSSADAHAGGGNNGFRQHADQ
NGRGDPAGNHFQIR
MRGTAPELQLHIASSRAAPRSPRPASSLAAGAAMDRKSKSAKGAASSAAASMAALAAAAAAGDSSSGPADGAPPPPPPHG
EEYSVPAKMAAVGDASSSSPVAPRRGVAAALGGGASSSSPAAVRRGAAAAAAASVVAAGGGGGPRCQAERCNANLMTEEK
PYNRRHKVCEAHSKAPVVLVAGLRQRFCQQCSRFHELSEFDDVKRSCRLRLAGHNERRRKSSADAHAGGGNNGFRQHADQ
NGRGDPAGNHFQIR
MRGTAPELQLHIASSRAAPRSPRPASSLAAGAAMDRKSKSAKGAASSAAASMAALAAAAAAGDSSSGPADGAPPPPPPHG
EEYSVPAKMAAVGDASSSSPVAPRRGVAAALGGGASSSSPAAVRRGAAAAAAASVVAAGGGGGPRCQAERCNANLMTEEK
PYNRRHKVCEAHSKAPVVLVAGLRQRFCQQCSRFHELSEFDDVKRSCRLRLAGHNERRRKSSADAHAGGGNNGFRQHADQ
NGRGDPAGNHFQIR
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF03110 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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CTTTATATCCCTTTCAACCCTTTTC...
CTTTATATCCCTTTCAACCCTTTTCCACCCGCTCCTACTTGGTTCGTCTTCCACTCATGAGAGGCACGGCACCAGAGCTCCAGCTCCACATCGCCAGCTCCCGGGCCGCACCTCGATCGCCCAGGCCGGCCTCCTCCCTCGCCGCCGGCGCCGCCATGGACCGCAAGAGCAAGTCCGCCAAGGGCGCCGCGAGCTCGGCAGCGGCGTCCATGGCCGCGCTCGCCGCAGCCGCCGCGGCCGGCGACAGCAGCTCGGGCCCCGCCGACGGCGCGCCGCCGCCGCCGCCGCCGCACGGTGAGGAGTACAGCGTGCCTGCGAAGATGGCGGCCGTGGGAGACGCCTCCAGCTCCTCCCCCGTGGCGCCGAGGAGGGGCGTGGCGGCCGCGTTGGGAGGCGGCGCCTCCAGCTCCTCCCCGGCCGCGGTGAGGAGGGGCGCGGCGGCGGCGGCGGCGGCGTCTGTCGTTGCGGCAGGCGGCGGCGGCGGGCCGAGGTGCCAGGCGGAGCGGTGCAACGCGAACCTGATGACCGAGGAGAAGCCGTACAACCGGAGGCACAAGGTGTGCGAGGCGCACTCCAAGGCCCCCGTCGTGCTCGTCGCCGGCCTCCGCCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCACGAGCTGTCGGAGTTCGACGACGTCAAGCGCAGCTGCCGCCTGCGTCTGGCCGGCCACAACGAGCGGCGCCGGAAGAGCTCGGCCGACGCGCACGCCGGCGGCGGCAATAATGGATTCCGCCAACACGCCGACCAGAACGGCCGCGGCGACCCGGCCGGGAACCACTTCCAGATCAGATAAAGCATGCTCTCTCTCTTCTGTCATGCAGCAGGATATGCTAGCATCATCACTACCGATAGATATTTATGCGTCTATCGTCTACCCGCCCCGAAAACCCTAGTTATATATATATATATATATATATATATATATATATATATATATATATAGACATATGCTGATTGTAACCTAATTAGCCTGCAGCCAGTTAAGCAGGGACTGCCTACTCTGCTAGGAGGACGTGTGTAATCATGTGGCCTGCGCAAACAGTAATTTGTGCTGGCTGCTGTGTATTCATGCTGCTCTGATAATCGTGTCGTGGTAATAATATATCCTATTTATTCTACTACTAGTAATATATACCGATT
GRMZM2G113779_T01 from maize genome v3
Amino Acid Sequence
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MTEEKPYNRRHKVCEAHSKAPVVLVAGLRQRFCQQCSRFHELSEFDDVKRSCRLRLAGHNERRRKSSADAHAGGGNNGFR
QHADQNGRGDPAGNHFQIR
Nucleotide Sequence
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AGGGGCGATCTAGAGATGACCGAGG...
AGGGGCGATCTAGAGATGACCGAGGAGAAGCCGTACAACCGGAGGCACAAGGTGTGCGAGGCGCACTCCAAGGCCCCCGTCGTGCTCGTCGCCGGCCTCCGCCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCACGAGCTGTCGGAGTTCGACGACGTCAAGCGCAGCTGCCGCCTGCGTCTGGCCGGCCACAACGAGCGGCGCCGGAAGAGCTCGGCCGACGCGCACGCCGGCGGCGGCAATAATGGATTCCGCCAACACGCCGACCAGAACGGCCGCGGCGACCCGGCCGGGAACCACTTCCAGATCAGATAAAGCATGCTCTCTCTCTTCTGTCATGCAGCAGGATATGCTAGCATCATCACTACCGATAGATATTTATGCGTCTATCGTCTACCCGCCCCGAAAACCCTAGTTATATATATATATATATATATATATATATATATATATATATATATATAGACATATGCTGATTGTAACCTAATTAGCCTGCAGCCCAGTTAAGCAGGGACTGCCTTACTCTGCTAGGAGGACGTGTGTAATCATGTGGCCTGCGCAAACAGTAATTTGTGCTGGCTGCTGTGTATTCATGCTGCTCTGATAATCGTGTCGTGGTAATAATATATCCTATTTATTCTACT
Zm00001d006451_T001 from maize genome v4
Amino Acid Sequence
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MRGTAPELQLHIASSRAAPRSPRPASSLAAGAAMDRKSKSAKGAASSAAASMAALAAAAAAGDSSSGPADGAPPPPPPHG
EEYSVPAKMAAVGDASSSSPVAPRRGVAAALGGGASSSSPAAVRRGAAAAAAASVVAAGGGGGPRCQAERCNANLMTEEK
PYNRRHKVCEAHSKAPVVLVAGLRQRFCQQCSRFHELSEFDDVKRSCRLRLAGHNERRRKSSADAHAGGGNNGFRQHADQ
NGRGDPAGNHFQIR
Nucleotide Sequence
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ATGAGAGGCACGGCACCAGAGCTCC...
ATGAGAGGCACGGCACCAGAGCTCCAGCTCCACATCGCCAGCTCCCGGGCCGCACCTCGATCGCCCAGGCCGGCCTCCTCCCTCGCCGCCGGCGCCGCCATGGACCGCAAGAGCAAGTCCGCCAAGGGCGCCGCGAGCTCGGCAGCGGCGTCCATGGCCGCGCTCGCCGCAGCCGCCGCGGCCGGCGACAGCAGCTCGGGCCCCGCCGACGGCGCGCCGCCGCCGCCGCCGCCGCACGGTGAGGAGTACAGCGTGCCTGCGAAGATGGCGGCCGTGGGAGACGCCTCCAGCTCCTCCCCCGTGGCGCCGAGGAGGGGCGTGGCGGCCGCGTTGGGAGGCGGCGCCTCCAGCTCCTCCCCGGCCGCGGTGAGGAGGGGCGCGGCGGCGGCGGCGGCGGCGTCTGTCGTTGCGGCAGGCGGCGGCGGCGGGCCGAGGTGCCAGGCGGAGCGGTGCAACGCGAACCTGATGACCGAGGAGAAGCCGTACAACCGGAGGCACAAGGTGTGCGAGGCGCACTCCAAGGCCCCCGTCGTGCTCGTCGCCGGCCTCCGCCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCACGAGCTGTCGGAGTTCGACGACGTCAAGCGCAGCTGCCGCCTGCGTCTGGCCGGCCACAACGAGCGGCGCCGGAAGAGCTCGGCCGACGCGCACGCCGGCGGCGGCAATAATGGATTCCGCCAACACGCCGACCAGAACGGCCGCGGCGACCCGGCCGGGAACCACTTCCAGATCAGATAAAGCATGCTCTCTCTCTTCTGTCATGCAGCAGGATATGCTAGCATCATCACTACCGATAGATATTTATGCGTCTATCGTCTACCCGCCCCGAAAACCCTAG
Zm00001eb105640_T002 from maize genome v5
Amino Acid Sequence
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MTEEKPYNRRHKVCEAHSKAPVVLVAGLRQRFCQQCSRFHELSEFDDVKRSCRLRLAGHNERRRKSSADAHAGGGNNGFR
QHADQNGRGDPAGNHFQIR
Nucleotide Sequence
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CCGCTCCTACTTGGTTCGTCTTCCA...
CCGCTCCTACTTGGTTCGTCTTCCACTCATGAGAGGCACGGCACCAGAGCTCCAGCTCCACATCGCCAGCTCCCGGGCCGCACCTCGATCGCCCAGGCCGGCCTCCTCCCTCGCCGCCGGCGCCGCCATGGACCGCAAGAGCAAGTCCGCCAAGGGCGCCGCGAGCTCGGCAGCGGCGTCCATGGCCGCGCTCGCCGCAGCCGCCGCGGCCGGCGACAGCAGCTCGGGCCCCGCCGACGGCGGCGGCGTCTGTCGTTGCGGCAGGCGGCGGCGGCGGGCCGAGGTGCCAGGCGGAGCGGTGCAACGCGAACCTGATGACCGAGGAGAAGCCGTACAACCGGAGGCACAAGGTGTGCGAGGCGCACTCCAAGGCCCCCGTCGTGCTCGTCGCCGGCCTCCGCCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCACGAGCTGTCGGAGTTCGACGACGTCAAGCGCAGCTGCCGCCTGCGTCTGGCCGGCCACAACGAGCGGCGCCGGAAGAGCTCGGCCGACGCGCACGCCGGCGGCGGCAATAATGGATTCCGCCAACACGCCGACCAGAACGGCCGCGGCGACCCGGCCGGGAACCACTTCCAGATCAGATAAAGCATGCTCTCTCTCTTCTGTCATGCAGCAGGATATGCTAGCATCATCACTACCGATAGATATTTATGCGTCTATCGTCTACCCGCCCCGAAAACCC
Zm00001eb105640_T003 from maize genome v5
Amino Acid Sequence
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MTEEKPYNRRHKVCEAHSKAPVVLVAGLRQRFCQQCSRFHELSEFDDVKRSCRLRLAGHNERRRKSSADAHAGGGNNGFR
QHADQNGRGDPAGNHFQIR
Nucleotide Sequence
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ACGGCACCAGAGCTCCAGCTCCACA...
ACGGCACCAGAGCTCCAGCTCCACATCGCCAGCTCCCGGGCCGCACCTCGATCGCCCAGGCCGGCCTCCTCCCTCGCCGCCGGCGCCGCCATGGACCGCAAGAGCAAGTCCGCCAAGGGCGCCGCGAGCTCGGCAGCGGCGTCCATGGCCGCGCTCGCCGCAGCCGCCGCGGCCGGCGACAGCAGCTCGGGCCCCGCCGGCGGCGTCTGTCGTTGCGGCAGGCGGCGGCGGCGGGCCGAGGTGCCAGGCGGAGCGGTGCAACGCGAACCTGATGACCGAGGAGAAGCCGTACAACCGGAGGCACAAGGTGTGCGAGGCGCACTCCAAGGCCCCCGTCGTGCTCGTCGCCGGCCTCCGCCAGCGCTTCTGCCAGCAATGCAGCCGGTTCCACGAGCTGTCGGAGTTCGACGACGTCAAGCGCAGCTGCCGCCTGCGTCTGGCCGGCCACAACGAGCGGCGCCGGAAGAGCTCGGCCGACGCGCACGCCGGCGGCGGCAATAATGGATTCCGCCAACACGCCGACCAGAACGGCCGCGGCGACCCGGCCGGGAACCACTTCCAGATCAGATAAAGCATGCTCTCTCTCTTCTGTCATGCAGCAGGATATGCTAGCATCATCACTACCGATAGATATTTATGCGTCTATCGTCTACCCGCCC
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